Phytophthora infestans Argonaute 1 binds microRNA and small RNAs from effector genes and transposable elements.
Identifieur interne : 000143 ( Main/Exploration ); précédent : 000142; suivant : 000144Phytophthora infestans Argonaute 1 binds microRNA and small RNAs from effector genes and transposable elements.
Auteurs : Anna K M. Sman [Suède] ; Johan Fogelqvist [Suède] ; Ramesh R. Vetukuri [Suède] ; Christina Dixelius [Suède]Source :
- The New phytologist [ 1469-8137 ] ; 2016.
Descripteurs français
- KwdFr :
- Cadres ouverts de lecture (génétique), Cytoplasme (métabolisme), Maladies des plantes (microbiologie), Nucléotides (métabolisme), Oomycetes (métabolisme), Phylogénie (MeSH), Phytophthora infestans (génétique), Phytophthora infestans (métabolisme), Protéines Argonaute (métabolisme), Protéines à fluorescence verte (métabolisme), Pseudogènes (génétique), Reproductibilité des résultats (MeSH), microARN (métabolisme), Éléments transposables d'ADN (génétique).
- MESH :
- génétique : Cadres ouverts de lecture, Phytophthora infestans, Pseudogènes, Éléments transposables d'ADN.
- microbiologie : Maladies des plantes.
- métabolisme : Cytoplasme, Nucléotides, Oomycetes, Phytophthora infestans, Protéines Argonaute, Protéines à fluorescence verte, microARN.
- Phylogénie, Reproductibilité des résultats.
English descriptors
- KwdEn :
- Argonaute Proteins (metabolism), Cytoplasm (metabolism), DNA Transposable Elements (genetics), Green Fluorescent Proteins (metabolism), MicroRNAs (metabolism), Nucleotides (metabolism), Oomycetes (metabolism), Open Reading Frames (genetics), Phylogeny (MeSH), Phytophthora infestans (genetics), Phytophthora infestans (metabolism), Plant Diseases (microbiology), Pseudogenes (genetics), Reproducibility of Results (MeSH).
- MESH :
- chemical , genetics : DNA Transposable Elements.
- chemical , metabolism : Argonaute Proteins, Green Fluorescent Proteins, MicroRNAs, Nucleotides.
- genetics : Open Reading Frames, Phytophthora infestans, Pseudogenes.
- metabolism : Cytoplasm, Oomycetes, Phytophthora infestans.
- microbiology : Plant Diseases.
- Phylogeny, Reproducibility of Results.
Abstract
Phytophthora spp. encode large sets of effector proteins and distinct populations of small RNAs (sRNAs). Recent evidence has suggested that pathogen-derived sRNAs can modulate the expression of plant defense genes. Here, we studied the sRNA classes and functions associated with Phytophthora infestans Argonaute (Ago) proteins. sRNAs were co-immunoprecipitated with three PiAgo proteins and deep sequenced. Twenty- to twenty-two-nucleotide (nt) sRNAs were identified as the main interaction partners of PiAgo1 and high enrichment of 24-26-nt sRNAs was seen in the PiAgo4-bound sample. The frequencies and sizes of transposable element (TE)-derived sRNAs in the different PiAgo libraries suggested diversified roles of the PiAgo proteins in the control of different TE classes. We further provide evidence for the involvement of PiAgo1 in the P. infestans microRNA (miRNA) pathway. Protein-coding genes are probably regulated by the shared action of PiAgo1 and PiAgo5, as demonstrated by analysis of differential expression. An abundance of sRNAs from genes encoding host cell death-inducing Crinkler (CRN) effectors was bound to PiAgo1, implicating this protein in the regulation of the expanded CRN gene family. The data suggest that PiAgo1 plays an essential role in gene regulation and that at least two RNA silencing pathways regulate TEs in the plant-pathogenic oomycete P. infestans.
DOI: 10.1111/nph.13946
PubMed: 27010746
Affiliations:
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Vetukuri</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Resistance Biology Unit, PO Box 102, SE-23053, Alnarp, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Resistance Biology Unit, PO Box 102, SE-23053, Alnarp</wicri:regionArea><wicri:noRegion>Alnarp</wicri:noRegion></affiliation></author><author><name sortKey="Dixelius, Christina" sort="Dixelius, Christina" uniqKey="Dixelius C" first="Christina" last="Dixelius">Christina Dixelius</name><affiliation wicri:level="1"><nlm:affiliation>Department of Plant Biology, Swedish University of Agricultural Sciences, Uppsala BioCenter, Linnéan Center for Plant Biology, PO Box 7080, SE-75007, Uppsala, Sweden.</nlm:affiliation><country xml:lang="fr">Suède</country><wicri:regionArea>Department of Plant Biology, Swedish University of Agricultural Sciences, Uppsala BioCenter, Linnéan Center for Plant Biology, PO Box 7080, SE-75007, Uppsala</wicri:regionArea><wicri:noRegion>Uppsala</wicri:noRegion></affiliation></author></analytic><series><title level="j">The New phytologist</title><idno type="eISSN">1469-8137</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Argonaute Proteins (metabolism)</term><term>Cytoplasm (metabolism)</term><term>DNA Transposable Elements (genetics)</term><term>Green Fluorescent Proteins (metabolism)</term><term>MicroRNAs (metabolism)</term><term>Nucleotides (metabolism)</term><term>Oomycetes (metabolism)</term><term>Open Reading Frames (genetics)</term><term>Phylogeny (MeSH)</term><term>Phytophthora infestans (genetics)</term><term>Phytophthora infestans (metabolism)</term><term>Plant Diseases (microbiology)</term><term>Pseudogenes (genetics)</term><term>Reproducibility of Results (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Cadres ouverts de lecture (génétique)</term><term>Cytoplasme (métabolisme)</term><term>Maladies des plantes (microbiologie)</term><term>Nucléotides (métabolisme)</term><term>Oomycetes (métabolisme)</term><term>Phylogénie (MeSH)</term><term>Phytophthora infestans (génétique)</term><term>Phytophthora infestans (métabolisme)</term><term>Protéines Argonaute (métabolisme)</term><term>Protéines à fluorescence verte (métabolisme)</term><term>Pseudogènes (génétique)</term><term>Reproductibilité des résultats (MeSH)</term><term>microARN (métabolisme)</term><term>Éléments transposables d'ADN (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA Transposable Elements</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Argonaute Proteins</term><term>Green Fluorescent Proteins</term><term>MicroRNAs</term><term>Nucleotides</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Open Reading Frames</term><term>Phytophthora infestans</term><term>Pseudogenes</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Cadres ouverts de lecture</term><term>Phytophthora infestans</term><term>Pseudogènes</term><term>Éléments transposables d'ADN</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Cytoplasm</term><term>Oomycetes</term><term>Phytophthora infestans</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Cytoplasme</term><term>Nucléotides</term><term>Oomycetes</term><term>Phytophthora infestans</term><term>Protéines Argonaute</term><term>Protéines à fluorescence verte</term><term>microARN</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Phylogeny</term><term>Reproducibility of Results</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Phylogénie</term><term>Reproductibilité des résultats</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Phytophthora spp. encode large sets of effector proteins and distinct populations of small RNAs (sRNAs). Recent evidence has suggested that pathogen-derived sRNAs can modulate the expression of plant defense genes. Here, we studied the sRNA classes and functions associated with Phytophthora infestans Argonaute (Ago) proteins. sRNAs were co-immunoprecipitated with three PiAgo proteins and deep sequenced. Twenty- to twenty-two-nucleotide (nt) sRNAs were identified as the main interaction partners of PiAgo1 and high enrichment of 24-26-nt sRNAs was seen in the PiAgo4-bound sample. The frequencies and sizes of transposable element (TE)-derived sRNAs in the different PiAgo libraries suggested diversified roles of the PiAgo proteins in the control of different TE classes. We further provide evidence for the involvement of PiAgo1 in the P. infestans microRNA (miRNA) pathway. Protein-coding genes are probably regulated by the shared action of PiAgo1 and PiAgo5, as demonstrated by analysis of differential expression. An abundance of sRNAs from genes encoding host cell death-inducing Crinkler (CRN) effectors was bound to PiAgo1, implicating this protein in the regulation of the expanded CRN gene family. The data suggest that PiAgo1 plays an essential role in gene regulation and that at least two RNA silencing pathways regulate TEs in the plant-pathogenic oomycete P. infestans.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">27010746</PMID><DateCompleted><Year>2018</Year><Month>01</Month><Day>30</Day></DateCompleted><DateRevised><Year>2020</Year><Month>09</Month><Day>30</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1469-8137</ISSN><JournalIssue CitedMedium="Internet"><Volume>211</Volume><Issue>3</Issue><PubDate><Year>2016</Year><Month>08</Month></PubDate></JournalIssue><Title>The New phytologist</Title><ISOAbbreviation>New Phytol</ISOAbbreviation></Journal><ArticleTitle>Phytophthora infestans Argonaute 1 binds microRNA and small RNAs from effector genes and transposable elements.</ArticleTitle><Pagination><MedlinePgn>993-1007</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1111/nph.13946</ELocationID><Abstract><AbstractText>Phytophthora spp. encode large sets of effector proteins and distinct populations of small RNAs (sRNAs). Recent evidence has suggested that pathogen-derived sRNAs can modulate the expression of plant defense genes. Here, we studied the sRNA classes and functions associated with Phytophthora infestans Argonaute (Ago) proteins. sRNAs were co-immunoprecipitated with three PiAgo proteins and deep sequenced. Twenty- to twenty-two-nucleotide (nt) sRNAs were identified as the main interaction partners of PiAgo1 and high enrichment of 24-26-nt sRNAs was seen in the PiAgo4-bound sample. The frequencies and sizes of transposable element (TE)-derived sRNAs in the different PiAgo libraries suggested diversified roles of the PiAgo proteins in the control of different TE classes. We further provide evidence for the involvement of PiAgo1 in the P. infestans microRNA (miRNA) pathway. Protein-coding genes are probably regulated by the shared action of PiAgo1 and PiAgo5, as demonstrated by analysis of differential expression. An abundance of sRNAs from genes encoding host cell death-inducing Crinkler (CRN) effectors was bound to PiAgo1, implicating this protein in the regulation of the expanded CRN gene family. The data suggest that PiAgo1 plays an essential role in gene regulation and that at least two RNA silencing pathways regulate TEs in the plant-pathogenic oomycete P. infestans.</AbstractText><CopyrightInformation>© 2016 Swedish University of Agricultural Sciences (SLU) New Phytologist © 2016 New Phytologist Trust.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Åsman</LastName><ForeName>Anna K M</ForeName><Initials>AK</Initials><AffiliationInfo><Affiliation>Department of Plant Biology, Swedish University of Agricultural Sciences, Uppsala BioCenter, Linnéan Center for Plant Biology, PO Box 7080, SE-75007, Uppsala, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Fogelqvist</LastName><ForeName>Johan</ForeName><Initials>J</Initials><AffiliationInfo><Affiliation>Department of Plant Biology, Swedish University of Agricultural Sciences, Uppsala BioCenter, Linnéan Center for Plant Biology, PO Box 7080, SE-75007, Uppsala, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vetukuri</LastName><ForeName>Ramesh R</ForeName><Initials>RR</Initials><AffiliationInfo><Affiliation>Department of Plant Protection Biology, Swedish University of Agricultural Sciences, Resistance Biology Unit, PO Box 102, SE-23053, Alnarp, Sweden.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dixelius</LastName><ForeName>Christina</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Department of Plant Biology, Swedish University of Agricultural Sciences, Uppsala BioCenter, Linnéan Center for Plant Biology, PO Box 7080, SE-75007, Uppsala, Sweden.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>EU257520</AccessionNumber><AccessionNumber>GSE75282</AccessionNumber><AccessionNumber>KU168413</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>03</Month><Day>24</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>New Phytol</MedlineTA><NlmUniqueID>9882884</NlmUniqueID><ISSNLinking>0028-646X</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D060565">Argonaute Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004251">DNA Transposable Elements</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D035683">MicroRNAs</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D009711">Nucleotides</NameOfSubstance></Chemical><Chemical><RegistryNumber>147336-22-9</RegistryNumber><NameOfSubstance UI="D049452">Green Fluorescent Proteins</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D060565" MajorTopicYN="N">Argonaute Proteins</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D003593" MajorTopicYN="N">Cytoplasm</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004251" MajorTopicYN="N">DNA Transposable Elements</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D049452" MajorTopicYN="N">Green Fluorescent Proteins</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D035683" MajorTopicYN="N">MicroRNAs</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009711" MajorTopicYN="N">Nucleotides</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009868" MajorTopicYN="N">Oomycetes</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016366" MajorTopicYN="N">Open Reading Frames</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D055750" MajorTopicYN="N">Phytophthora infestans</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011544" MajorTopicYN="N">Pseudogenes</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015203" MajorTopicYN="N">Reproducibility of Results</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Argonaute (Ago)</Keyword><Keyword MajorTopicYN="Y">Crinkler (CRN)</Keyword><Keyword MajorTopicYN="Y">Phytophthora infestans</Keyword><Keyword MajorTopicYN="Y">effector</Keyword><Keyword MajorTopicYN="Y">microRNA (miRNA)</Keyword><Keyword MajorTopicYN="Y">transposon</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>12</Month><Day>03</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2016</Year><Month>02</Month><Day>26</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2016</Year><Month>3</Month><Day>25</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2016</Year><Month>3</Month><Day>25</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2018</Year><Month>1</Month><Day>31</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">27010746</ArticleId><ArticleId IdType="doi">10.1111/nph.13946</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Suède</li></country></list><tree><country name="Suède"><noRegion><name sortKey=" Sman, Anna K M" sort=" Sman, Anna K M" uniqKey=" Sman A" first="Anna K M" last=" Sman">Anna K M. Sman</name></noRegion><name sortKey="Dixelius, Christina" sort="Dixelius, Christina" uniqKey="Dixelius C" first="Christina" last="Dixelius">Christina Dixelius</name><name sortKey="Fogelqvist, Johan" sort="Fogelqvist, Johan" uniqKey="Fogelqvist J" first="Johan" last="Fogelqvist">Johan Fogelqvist</name><name sortKey="Vetukuri, Ramesh R" sort="Vetukuri, Ramesh R" uniqKey="Vetukuri R" first="Ramesh R" last="Vetukuri">Ramesh R. Vetukuri</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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